PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01958.1.g00030.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 74aa    MW: 8360.88 Da    PI: 10.4019
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01958.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.5e-271666151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  k+ien++ rqvtfskRr+g++KKA+EL +LCda++ vi+f +tg+ly++ss
  Zpz_sc01958.1.g00030.1.am.mk 16 KKIENETSRQVTFSKRRAGMFKKAKELAILCDAQIGVIVFTNTGQLYDFSS 66
                                  78***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-33867IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-25870IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.202868IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-251030IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001064IPR002100Transcription factor, MADS-box
PfamPF003191.0E-251764IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-253045IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-254566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MRLMPGTMVR GKTILKKIEN ETSRQVTFSK RRAGMFKKAK ELAILCDAQI GVIVFTNTGQ  60
LYDFSSCSYF AYVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656060.13e-27PREDICTED: MADS-box transcription factor 23-like
SwissprotA2RVQ51e-26AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLA0A0E0HQK31e-30A0A0E0HQK3_ORYNI; Uncharacterized protein
STRINGOB06G22200.14e-29(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.17e-28AGAMOUS-like 16